7b98ac9a1533c82c511acb71d63d100c33a32930,cnvlib/reference.py,,combine_probes,#Any#Any#Any#Any#Any#Any#Any#,23

Before Change

    cvg_centers = np.apply_along_axis(metrics.biweight_location, 0,
                                      all_coverages)
    logging.info("Calculating bin spreads")
    spreads = np.apply_along_axis(metrics.biweight_midvariance, 0,
                                  all_coverages)
    columns["spread"] = spreads
    columns.update({
        "chromosome": cnarr1.chromosome,
        "start": cnarr1.start,

After Change

    cvg_centers = np.apply_along_axis(metrics.biweight_location, 0,
                                      all_coverages)
    logging.info("Calculating bin spreads")
    spreads = np.asarray([metrics.biweight_midvariance(a, initial=i)
                          for a, i in zip(all_coverages.T, cvg_centers)])
    columns.update({
        "chromosome": cnarr1.chromosome,
        "start": cnarr1.start,

Instances