7979c42982d57bc84226baa863889938599a360d,cnvlib/call.py,,absolute_threshold,#Any#Any#Any#Any#,31

Before Change

        cnum = 0
        for cnum, thresh in enumerate(thresholds):
            if row["log2"] <= thresh:
                break
        else:
            ref_copies = _reference_copies_pure(row["chromosome"], ploidy,
                                                is_reference_male)
            cnum = int(np.ceil(_log2_ratio_to_absolute_pure(row["log2"],

After Change

                                            is_reference_male)
        for cnum, thresh in enumerate(thresholds):
            if row["log2"] <= thresh:
                if ref_copies != ploidy:
                    cnum = int(cnum * ref_copies / ploidy)
                break
        else:
            cnum = int(np.ceil(_log2_ratio_to_absolute_pure(row["log2"],
                                                            ref_copies)))

Instances