3b2380c30645620e984c3ddb8a917f3a3773800b,src/biopython/application/blast/webapp.py,BlastWebApp,__init__,#BlastWebApp#Any#Any#Any#Any#Any#Any#,59

Before Change

                if isinstance(sequence, ProteinSequence) != requires_protein:
                    raise ValueError("Query type is not suitable for program")
        elif isinstance(query, Sequence):
            self._query = query.copy()
        else:
            if requires_protein:
                self._query = ProteinSequence(str(query))
            else:

After Change

        elif isinstance(query, Sequence):
            self._query = str(query)
        else:
            self._query = query
        
        // Check for unsuitable symbols in query string
        if requires_protein:
            ref_alphabet = ProteinSequence.alphabet
        else:
            ref_alphabet = NucleotideSequence.alphabet_amb
        for symbol in self._query:
            if not symbol.upper() in ref_alphabet:
                raise ValueError("Query sequence contains unsuitable symbols")
        
        self._database = database
        self._gap_openining = None
        self._gap_extension = None
        self._word_size = None

Instances