ef73e32bcf5dc348c99bc2eb476b6a17a482901a,hicexplorer/hicCorrectMatrix.py,,main,#Any#,546

Before Change

        log.setLevel(logging.INFO)

    // args.chromosomes
    if (args.matrix.endswith(".cool") or ".mcool" in args.matrix) and args.chromosomes is not None and len(args.chromosomes) == 1:
        ma = hm.hiCMatrix(args.matrix, chrnameList=toString(args.chromosomes))
    else:
        ma = hm.hiCMatrix(args.matrix)

After Change

        log.setLevel(logging.INFO)

    // args.chromosomes
    if check_cooler(args.matrix) and args.chromosomes is not None and len(args.chromosomes) == 1:
        ma = hm.hiCMatrix(args.matrix, chrnameList=toString(args.chromosomes))
    else:
        ma = hm.hiCMatrix(args.matrix)

Instances