f110fcf71c790cb8894a450c0ab2eaf3d22866dd,prody/database/dali.py,,searchDali,#Any#Any#Any#Any#,23

Before Change

            atoms = parsePDB(pdb)
            chain_set = set(atoms.getChids())
            // pdbId = "s001"
            pdbId = ".".join(pdb.split(os.sep)[-1].split(".")[0:-1])
            if not chain in chain_set:
                raise ValueError("input PDB file does not have chain " + chain)
            
            if len(chain_set) > 1:

After Change

            filename, ext = os.path.splitext(filename)
            if ext.lower() == ".gz":
                filename2, ext2 = os.path.splitext(filename)
                if ext2.lower() == ".pdb":
                    filename = filename2
            pdbId = filename
            if not chain in chain_set:
                raise ValueError("input PDB file does not have chain " + chain)
            

Instances