e2eab73f998e1ba9d3c47f2c96aa84027ec58c17,deepvariant/vcf_stats_vis.py,,_build_indel_size_chart,#Any#,243

Before Change

                                     "Deletions")
  // using "size" alone makes bars overlap slightly, so instead use bin_start and
  // bin_end to force each bar to cover exactly one integer position:
  indel_size_data["bin_start"] = indel_size_data["size"] - 0.5
  indel_size_data["bin_end"] = indel_size_data["size"] + 0.5

  indels_linear = alt.Chart(indel_size_data).mark_bar().encode(

After Change

def _build_indel_size_chart(data):
  Create the indel size chart.
  width = 400
  height = 100
  placeholder_height = (2 * height) + 20  // 2 charts, plus spacing
  title = "Biallelic indel size distribution"
  ordered_labels = ["Insertion", "Deletion"]
  indel_size_data = _integer_counts_to_histogram(data)
  indel_size_data["type"] = np.where(indel_size_data["s"] > 0, "Insertion",
                                     "Deletion")

  indel_size_chart = _placeholder_for_empty_chart(
      "No biallelic indels",
      width=width,
      height=placeholder_height,
      title=title)

  if not indel_size_data.empty:
    indels_linear = alt.Chart(indel_size_data).mark_bar().encode(
        x=alt.X("s", title="size"),

Instances