bb8db448470551c15c9b0ddab573a0c8e2e6303a,deepvariant/vcf_stats_vis.py,,_build_type_chart,#Any#,85

Before Change

def _build_type_chart(stats):
  Create a chart of the counts of each variant type.
  type_labels = ["Insertion", "Deletion", "SNV", "Complex"]
  type_data = stats[stats["label"].isin(type_labels)]
  type_chart = alt.Chart(type_data).mark_bar().encode(
      x=alt.X(
          "label", title=None, sort=type_labels, axis=alt.Axis(labelAngle=0)),

After Change

          legend=None,
          sort=ordered_variant_type_labels,
          scale=alt.Scale(scheme="set1")))
  labels = alt.Chart(variant_type_counts).mark_text(dy=-5).encode(
      x="label", y="value", text=alt.Text("value", format=".4s"))
  type_chart = (bars + labels).properties(
      width=400, height=200, title="Variant types")
  return type_chart

Instances