e2eab73f998e1ba9d3c47f2c96aa84027ec58c17,deepvariant/vcf_stats_vis.py,,_build_indel_size_chart,#Any#,243

Before Change

def _build_indel_size_chart(vis_data):
  Create the indel size chart.
  indel_size_data = pd.DataFrame(
      vis_data["indel_sizes"], columns=["size", "count"])
  indel_size_data["type"] = np.where(indel_size_data["size"] > 0, "Insertions",
                                     "Deletions")
  // using "size" alone makes bars overlap slightly, so instead use bin_start and
  // bin_end to force each bar to cover exactly one integer position:

After Change

  height = 100
  placeholder_height = (2 * height) + 20  // 2 charts, plus spacing
  title = "Biallelic indel size distribution"
  ordered_labels = ["Insertion", "Deletion"]
  indel_size_data = _integer_counts_to_histogram(data)
  indel_size_data["type"] = np.where(indel_size_data["s"] > 0, "Insertion",
                                     "Deletion")

Instances