eea3747cca68cecc7c6080e02f059bbea1016d19,deepvariant/make_examples.py,,extract_sample_name_from_sam_reader,#Any#,532

Before Change

        "name of the sample with the --sample_name argument.")
  elif len(samples) > 1:
    raise ValueError(
        "Multiple samples ({}) were found in the input reads. DeepVariant can "
        "only call variants from a BAM file containing a single sample.".format(
            ", ".join(sorted(samples))))
  return next(iter(samples))

// ---------------------------------------------------------------------------

After Change

        _DEFAULT_SAMPLE_NAME)
    return _DEFAULT_SAMPLE_NAME
  elif len(samples) > 1:
    logging.warning(
        "Multiple samples (%s) were found in the input reads. "
        "Please confirm this is intended. For now, DeepVariant "
        "will use the first sample name %s.", ", ".join(sorted(samples)),
        samples_list[0])
    return samples_list[0]
  return next(iter(samples))

// ---------------------------------------------------------------------------

Instances