4f3ec507fb0c87f0fa25f3dee5d7006e0c3dfecd,third_party/nucleus/util/variant_utils.py,,is_variant_call,#Any#Any#Any#Any#,485

Before Change

  else:
    if call_indices is None:
      call_indices = range(len(variant.calls))
    return any(
        any(g > 0
            for g in variant.calls[i].genotype) or
        (no_calls_are_variant and
         not variantcall_utils.has_genotypes(variant.calls[i]))
        for i in call_indices)


def has_calls(variant):
  Does variant have any genotype calls?

After Change

      for g in variant.calls[i].genotype:
        if g > 0 or (no_calls_are_variant and g < 0):
          return True
    return False


def has_calls(variant):
  Does variant have any genotype calls?

Instances