ee17dc4a06779050cb4ccf75722ea018ae8d2af2,hicexplorer/hicTransform.py,,main,#,87

Before Change

            trasf_matrix[chr_range[0]:chr_range[1], chr_range[0]:chr_range[1]] = lil_matrix(submatrix)

        hic_ma.setMatrix(trasf_matrix.tocsr(), cut_intervals=hic_ma.cut_intervals)
        hic_ma.save("obs_norm_pearson."+ args.outFileName, pSymmetric=False, pApplyCorrection=False)

    if args.method == "obs_exp":
        for chrname in hic_ma.getChrNames():
            chr_range = hic_ma.getChrBinRange(chrname)

After Change

    if not args.outFileName.endswith(".h5") or args.outFileName.endswith(".cool"):
        log.error("Output filetype not known.")
        log.error("It is: {}".format(args.outFileName))
        log.error("Accepted is .h5 or .cool")
        exit(1)

Instances