b773c3bf26cde0c8a3b848bc5ad082d3a271c092,hicexplorer/chicSignificantInteractions.py,,compute_new_p_values,#,177

Before Change

        
        if pData[key][-3] <= pPValue:
            accepted[key] = pData[key]
            log.debug("pMergedLinesDict[key {}".format(pMergedLinesDict[key]))
            for line in pMergedLinesDict[key]:
                log.debug("line[:3] {}".format(line[:3]))
                accepted_lines.append(line[:3])

After Change

            try:
                pData[key][-3] = 1 - pBackgroundSumOfDensities[key][int(float(pData[key][-1]))]
            except:
                pData[key][-3] = 1 - pBackgroundSumOfDensities[key][-1]
                log.error("Not enough p-values precomputed, using highest value instead. Please increase --xFoldMaxValueNB value. Value {}, max value {}".format(int(float(pData[key][-1])), len(pData[key])))
                
                // exit(1)
        if pData[key][-3] <= pPValue:
            accepted[key] = pData[key]

Instances