5498c0b832416ab279cade7b71c43c28c397ad8c,mro/stages/counter/report_molecules/__init__.py,,main,#,70

Before Change

                              barcode_info=barcode_info)

    // Initialize per-library metrics
    lib_metrics = defaultdict(lambda: {
        cr_mol_counter.USABLE_READS_METRIC: 0
    })

    // Record read-counts per molecule. Note that UMIs are not contiguous
    // in the input because no sorting was done after UMI correction.

After Change

    // Initialize per-library metrics
    lib_metrics = {}
    for lib_idx in xrange(len(library_info)):
        lib_metrics[str(lib_idx)] = {}
        lib_metrics[str(lib_idx)][cr_mol_counter.USABLE_READS_METRIC] = 0


    // Record read-counts per molecule. Note that UMIs are not contiguous
    // in the input because no sorting was done after UMI correction.

    prev_gem_group = None
    prev_barcode_idx = None

    for (gem_group, barcode_seq), reads_iter in \

Instances