e66f756f492ef8e6a4c398c512eba867cad2652f,atlas/rules/get_fasta_of_bins.py,,,#,44

Before Change

if __name__ == "__main__":
    try:
        log=open(snakemake.log[0],"w")
        sys.stderr= log
        sys.stdout= log
        
        get_fasta_of_bins(
            snakemake.input.cluster_attribution,
            snakemake.input.contigs,
            snakemake.output[0],
        )
    except NameError:
        p = argparse.ArgumentParser()
        p.add_argument("--cluster-attribution")
        p.add_argument("--contigs")
        p.add_argument("--out-folder")
        args = vars(p.parse_args())
        get_fasta_of_bins(**args)

After Change

        get_fasta_of_bins(**args)
    else:

        with open(snakemake.log[0],"w") as log:
            sys.stderr= sys.stdout = log

            get_fasta_of_bins(
                snakemake.input.cluster_attribution,
                snakemake.input.contigs,
                snakemake.output[0],
            )

Instances