2e19f878707e04da7d9a4ccbe0cceb515b433124,dragonn/vis/__init__.py,,plot_ism,#,12

Before Change

def plot_ism(ism_mat,title,vmin=None,vmax=None):
    // create discrete colormap of ISM scores
    extent = [0, ism_mat.shape[0], 0, 100*ism_mat.shape[1]]
    plt.figure(figsize=(20,3))
    if vmin==None:
        vmin=np.amin(ism_mat)
    if vmax==None:
        vmax=np.amax(ism_mat)

After Change

    ymin=np.amin(ism_mat)
    ymax=np.amax(ism_mat)
    axes[1].imshow(ism_mat.T,extent=extent,vmin=ymin, vmax=ymax, interpolation="nearest",aspect="auto")
    axes[1].set_xlabel("Sequence base")
    axes[1].set_ylabel("ISM Score")
    axes[1].set_title(title)
    axes[1].set_yticks(np.arange(50,100*ism_mat.shape[1],100),("A","C","G","T"))
    plt.set_cmap("RdBu")

Instances