c1c5544326a7e2eb080101cf2ca29707b5e41736,lib/python/cellranger/rna/feature_ref.py,,parse_feature_def_file,#,300

Before Change

            if "\t" in row["name"]:
                raise FeatureDefException("Feature name field cannot contain tabs: "%s"" % row["name"])

            if " " in row["id"] or "\t" in row["id"]:
                raise FeatureDefException("Feature id field cannot contain whitespace: "%s"" % row["id"])

            // Additional columns become key-value pairs
            // Maintain input order
            tag_cols = [c for c in reader.fieldnames if c not in BASE_FEATURE_FIELDS and c in row]

            tags = OrderedDict()
            for key in tag_cols:

After Change

            if "\t" in row["name"]:
                raise FeatureDefException("Feature name field cannot contain tabs: "%s"" % row["name"])

            allowed_id_chars = set(string.printable) - set(string.whitespace) - set("/,\""\\`")

            for (idx, c) in enumerate(row["id"]):
                if not c in allowed_id_chars:
                    if c in string.whitespace:

Instances