ca5deddb70ab53ac3b98ae2ae94af033693ab0b8,skbio/diversity/alpha/_base.py,,faith_pd,#,263

Before Change

    counts_by_node, tree_index, branch_lengths = \
        _vectorize_counts_and_tree(counts, otu_ids, tree)

    counts_by_node = np.where(counts_by_node > 0, 1, 0)
    result = (branch_lengths * counts_by_node).sum()

    return result


@experimental(as_of="0.4.0")
def fisher_alpha(counts):

After Change

    counts_by_node, tree_index, branch_lengths = \
        _vectorize_counts_and_tree(counts, otu_ids, tree)

    return _faith_pd(counts_by_node, branch_lengths)


@experimental(as_of="0.4.0")
def fisher_alpha(counts):

Instances