c02df66939452dded7d83ac2bb422db76212eb8a,rmgpy/tools/mergemodels.py,,combine_models,#,138

Before Change

    label_index_dict = {}
    for s in final_model.species:
        if s.label not in label_index_dict:
            label_index_dict[s.label] = [s.index]
        else:
            if s.index in label_index_dict[s.label]:
                // obtained a duplicate
                s.index = max(label_index_dict[s.label]) + 1
                print("Reindexed {0} due to dublicate labels and index".format(s.label))
            label_index_dict[s.label].append(s.index)

    return final_model

After Change

    // reindex the unique species (to avoid name conflicts on save)
    speciesIndex = 0
    for spec in final_model.species:
        if spec.label not in ["Ar", "N2", "Ne", "He"]:
            spec.index = speciesIndex + 1
            speciesIndex += 1

Instances