0d96f546e8512e200e3ad0e9bfe8a23b42a478bc,skbio/diversity/beta/_base.py,,beta_diversity,#,29

Before Change

        raise ValueError(
            "Number of rows in counts must be equal to number of provided "
            "ids.")
    if metric in _skbio_metrics:
        metric = _skbio_metrics[metric]

    if callable(metric):
        metric = partial(metric, **kwargs)

    distances = pdist(counts, metric)

After Change

        raise ValueError(
            "Number of rows in counts must be equal to number of provided "
            "ids.")
    if metric in _skbio_metrics:
        if metric == "unweighted_unifrac":
            metric, counts, _ = _unweighted_unifrac_pdist_f(
                counts, otu_ids=kwargs["otu_ids"], tree=kwargs["tree"])
        elif metric == "weighted_unifrac":
            try:
                normalized = kwargs["normalized"]
            except KeyError:
                normalized=False
            metric, counts, _ = _weighted_unifrac_pdist_f(
                counts, otu_ids=kwargs["otu_ids"], tree=kwargs["tree"],
                normalized=normalized)
        else:
            metric = _skbio_metrics[metric]
    elif callable(metric):
        metric = partial(metric, **kwargs)
    else:
        pass

    distances = pdist(counts, metric)
    return DistanceMatrix(distances, ids)

pw_distances_from_table_deprecation_reason = (

Instances