31978b5eb3ccc4683ca0abb22697ebac80f2cba9,cnvlib/vary.py,,_parse_records,#,89

Before Change

        sample = record.genotype(sample_id)

        // Depth filter
        if "DP" in sample.data._fields:
            depth = sample.data.DP
        else:
            // SV, probably
            cnt_depth += 1
            continue
        if depth < min_depth:
            cnt_depth += 1
            continue

After Change

            continue

        sample = record.genotype(sample_id)
        depth, zygosity, alt_count = _extract_genotype(sample)
        if normal_id:
            normal = record.genotype(normal_id)
            n_depth, n_zygosity, n_alt_count = _extract_genotype(normal)

Instances