f5fe2bf2204d2223a6dcb9bd2a0b16c358ca2826,dataPrepScripts/CreateTensor.py,,GenerateTensor,#,18

Before Change

                else:
                    print >> sys.stderr, "Should not reach here: %s, %s" % (refBase, queryBase)

    outputLine = "%s %d %s" % (ctgName, center, refSeq[center-(param.flankingBaseNum+1):center+param.flankingBaseNum])
    for x in alnCode:
        outputLine += " %0.1f" % x
    return outputLine

After Change

    newRefPos = center - (0 if args.refStart == None else (args.refStart - 1))
    if (newRefPos - (param.flankingBaseNum+1) >= 0):
        outputLine = "%s %d %s %s" % (ctgName, center, refSeq[newRefPos-(param.flankingBaseNum+1):newRefPos+param.flankingBaseNum], " ".join("%0.1f" % x for x in alnCode))
        return outputLine
    else:
        return None

Instances